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Red Flags: 
= character 
= injury
| Rk | Player | School | Rating | Red Flags |
| 1. | Logan Thomas* | Virginia Tech | – | – |
| 2. | Matt Barkley | USC | – | – |
| 3. | Tyler Wilson | Arkansas | – | – |
| 4. | Tyler Bray* | Tennessee | – | – |
| 5. | Aaron Murray* | Georgia | – | – |
| 6. | Geno Smith | West Virginia | – | – |
| 7. | Landry Jones | Oklahoma | – | – |
| 8. | E.J. Manuel | Florida State | – | – |
| 9. | Brad Sorensen | Southern Utah | – | – |
| 10. | Mike Glennon | N.C. State | – | – |
| 11. | James Vandenberg | Iowa | – | – |
| 12. | Collin Klein | Kansas State | – | – |
| 13. | Matt Scott | Arizona | – | – |
| 14. | MarQueis Gray | Minnesota | – | – |
| 15. | Ryan Nassib | Syracuse | – | – |
| 16. | Jeff Tuel | Washington State | – | – |
| 17. | Dayne Crist | Kansas | – | – |
| 18. | Kyle Padron | Eastern Washington | – | – |
| 19. | Alex Carder | Western Michigan | – | – |
| 20. | Sean Renfree | Duke | – | – |